Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HNRNPK

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

sample_type
cell line
sex
female
dev stage
adult
age
53 year
donor ID
ENCDO000AAD
lab
Xiang-Dong Fu, UCSD
source
ATCC
health state
chronic myelogenous leukemia (CML)
cell line
K562

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/9942509e-9f5f-46ac-9e6f-93d214db9ab5/@@download/attachment/ChIP-seq_Protocol_for_RNA-Binding_Proteins_ENCODE_Fu_lab.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
82271507
Reads aligned (%)
67.5
Duplicates removed (%)
73.4
Number of peaks
3991 (qval < 1E-05)

hg19

Number of total reads
82271507
Reads aligned (%)
66.9
Duplicates removed (%)
74.7
Number of peaks
3862 (qval < 1E-05)

Base call quality data from DBCLS SRA