Antigen

Antigen Class

TFs and others

Antigen

HNRNPK

Cell type

Cell type Class

Blood

Cell type

K-562

Primary Tissue

Blood

Tissue Diagnosis

Leukemia Chronic Myelogenous

Sample

sample_type

cell line

sex

female

dev stage

adult

age

53 year

donor ID

ENCDO000AAD

lab

Xiang-Dong Fu, UCSD

source

ATCC

health state

chronic myelogenous leukemia (CML)

cell line

K562

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/9942509e-9f5f-46ac-9e6f-93d214db9ab5/@@download/attachment/ChIP-seq_Protocol_for_RNA-Binding_Proteins_ENCODE_Fu_lab.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

82271507

Reads aligned (%)

67.5

Duplicates removed (%)

73.4

Number of peaks

3991 (qval < 1E-05)

hg19

Number of total reads

82271507

Reads aligned (%)

66.9

Duplicates removed (%)

74.7

Number of peaks

3862 (qval < 1E-05)